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Species belonging to selected taxon:

Nicotiana tabacum



ABOUT THIS RECORD

ID: MNEST001629
species: Nicotiana tabacum
miRNA family: MIR1530
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGTCACATAAATTAAAATAG

miRNA*
GTTCTAATTTCTTTGACACTT

mismatches: 5
bulges: 0

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pre-miRNA
TATACACCTTCTGTTCTAATTTCTTTGACACTTTTTGTTAGTTTGTTCCAAAAAGGACGGACATATTTGATATTTGAGAATACTTTACCTTAACCTTAAT
AGAATTTTTTATGACATCACATATATTATGGAATATATACGACCATAATTTTCAAATATCTTATAGTCGTACAAATATTATAGCATGTTTAATACCACAA
CTTTCAAATTCTTCTTTTCCTTAAAAACAAAATATGTCACATAAATTAAAATAGAGGAAGTAT


dot-bracket secondary structure
.((((..((((((((.((((((...(((((..(((((((.((((((((......)))))))).(((.((((.((.((((((.((................
)).))))))...)).)))).)))..(((.(((((((.((((((.((((............)))).)))))).((((((......)))))).)))......
................)))).))).)))))))..)))))...)))))).))))))))..))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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